PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MDP0000258984
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Malus
Family C3H
Protein Properties Length: 378aa    MW: 42343 Da    PI: 8.8095
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MDP0000258984genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH18.43.9e-067296126
                   --S---SGGGGTS--TTTTT-SS-SS CS
        zf-CCCH  1 yktelCrffartGtCkyGdrCkFaHg 26
                   ykt lCr f+  G C+ G rC+FaHg
  MDP0000258984 72 YKTQLCRKFQM-GCCSSGQRCSFAHG 96
                   9**********.*************9 PP

2zf-CCCH27.36.4e-09132155326
                    S---SGGGGTS--TTTTT-SS-SS CS
        zf-CCCH   3 telCrffartGtCkyGdrCkFaHg 26 
                     ++Cr f+r GtC+yGd+C+F H+
  MDP0000258984 132 VRICRSFFRWGTCSYGDKCRFRHV 155
                    799******************885 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF902291.03E-769101IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.104.2E-1369101IPR000571Zinc finger, CCCH-type
SMARTSM003560.00347197IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.547198IPR000571Zinc finger, CCCH-type
SMARTSM003563.0E-4129156IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.723129157IPR000571Zinc finger, CCCH-type
PfamPF006421.6E-6131155IPR000571Zinc finger, CCCH-type
SuperFamilySSF902292.09E-6132158IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.103.7E-7133155IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 378 aa     Download sequence    Send to blast
MGTPLPTPQF FAQYLESGDS RRQRKHQIPT EEKEIKAQSD INSQAFKKPR TSETVSNSNA  60
ASGQNKMLPS YYKTQLCRKF QMGCCSSGQR CSFAHGTSDL RRTLRDAQGM ETEKGNLARR  120
TWNGDHGSSN GVRICRSFFR WGTCSYGDKC RFRHVNPENI RDSSFISIST AGGSAQFDCK  180
KSLEQRKLCG YTTPECGSVQ ANSLTAYTRG NNASNHRMGI AIAYKQGQST QCNLEWNELE  240
KLSRIYADWI EDMPLLHGSS SKVECYSSLI TSENSPLAIC VLGSHTCASV CMHEFAIFSQ  300
TKTVATQQGL KPLSCLGPRW PLMDIFGFRF STRERACKDP RMSMMTNHVC FLGLQFVQDA  360
EILGEKCPAL KKLPLKED
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009349123.10.0PREDICTED: zinc finger CCCH domain-containing protein 28-like
TrEMBLM5XE531e-57M5XE53_PRUPE; Uncharacterized protein
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF15275712
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G19360.16e-16C3H family protein